legend  pdf

interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

structure name	PYROCOCCUS ABYSSI B FAMILY DNA POLYMERASE BOUND TO A DSDNA, IN EDITION MODE (DNA polymerase 1)
reference	Delarue et al. J.Mol.Biol. 423 315 2012
source	Pyrococcus abyssi
experiment	X-ray (resolution=2.15, R-factor=0.170)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family B; DNA polymerase family B, exonuclease do;
redundant complexes	4flt_A 4flu_A 4flv_A 4flx_A 4fly_A 4flz_A 4fm0_A 4fm1_A 4fm2_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4flw_A interface=249,268,613,615, hagmiidadyitedgkpiirifkkekgefkveydrtfrpyiyallkddsaidevkkitaerhgkivritevekvqkkflgrpievwklylehpqdvpairekirehpavvdifeydipfakrylidkgltpmegneeltflavdietlyhegeefgkgpiimisyadeegakvitwksidlpyvevvsseremikrlvkvirekdpdviityngdnfafpyllkraeklgiklplgrdnsepkmqrmgDslaveikgrihfdlfpviRrtinlptytleavyeaifgkskekvyaheiaeawetgkglervakysmedakvtfelgkeffpmeaqlarlvgqpvwdvsrsstgnlvewfllrkayernelapnkpdereyerrlresyegvkepekglwegivsldfrslypsiiithnvspdtlnrenckeydvapqvghrfckdfpgfipsllgnlleerqkikkrmkeskdpvekklldyrqraikilansyygyygyakarwyckecaesvtawgrqyidlvrrelesrgfkvlyidtdglyatipgakheeikekalkfveyinsklpglleleyegfyargffvtkkkyalideegkivtrgleivRrDwseiaketqakvleailkhgnvdeavkivkevteklskyeippeklviyeqitrplseykaigphvavakrlaakgvkvkpgmvigyivlrgdgpiskraiaieefdpkkhkydaeyyienqvlpaverilrafgyrkedlky

No structural evidence for specific binding to DNA (<4 informative columns)

Dendrogram of similar interfaces ?