4gdf_AB : 3D-footprint complex

structure name	A CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN
reference	Chang et al. 'Cell 3 1117 2013
source	Simian virus 40
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	2itl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gdf_A interface=21,22,23,24,25,74,137,140,202,383, kvedpkdfpsellsflshavFSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphrhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfnpeeaeetkQvsWklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaaifadskNqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsvkvnlekkHlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigvld > 4gdf_B interface=23,24,25,72,74,383, kvedpkdfpsellsflshavfsNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphRhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsvkvnlekkHlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigvld
interface signature	FSNRTRQWNH/NRTRRH

Estimated binding specificities ?

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# IC=10.535 IC/col=0.878 n_of_columns=12

specificity:

A |   8   0   0   0   8   0   9  24  24   0   0   0
C |   8   0  96  78   8  96   0  24  24   0  96   8
G |  72  96   0   8   8   0   0  24  24  96   0   1
T |   8   0   0  10  72   0  87  24  24   0   0  87

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updated Mon Jan 5 09:14:59 2026