4gdf_EF : 3D-footprint complex

structure name	A CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN
reference	Chang et al. 'Cell 3 1117 2013
source	Simian virus 40
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	2itl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gdf_E interface=21,22,23,24,25,74,137,140,202,383, kvedpkdfpsellsflshavFSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphrhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfnpeeaeetkQvsWklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaaifadskNqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsvkvnlekkHlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigvld > 4gdf_F interface=23,24,25,72,74,383, kvedpkdfpsellsflshavfsNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphRhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsvkvnlekkHlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigvld
interface signature	FSNRTRQWNH/NRTRRH

Estimated binding specificities ?

readout + contact

# IC=10.435 IC/col=0.870 n_of_columns=12

specificity:

A |  69   0   0  24  24  96   0  69   0   0   0   8
C |   8   0  96  24  24   0   0  11   8   0  96  69
G |  11  96   0  24  24   0  96   8  87  96   0   8
T |   8   0   0  24  24   0   0   8   1   0   0  11

scan!

home
updated Mon Jan 5 09:16:14 2026