4gdf_EF : 3D-footprint complex

structure name	A CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN
reference	Chang et al. 'Cell 3 1117 2013
source	Simian virus 40
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	2itl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gdf_E interface=21,22,23,24,25,74,137,140,202,383, kvedpkdfpsellsflshavFSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphrhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfnpeeaeetkQvsWklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaaifadskNqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsvkvnlekkHlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigvld > 4gdf_F interface=23,24,25,72,74,383, kvedpkdfpsellsflshavfsNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphRhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfnpeeaeetkqvswklvteyametkcddvllllgmylefqysfemclkcikkeqpshykyhekhyanaaifadsknqkticqqavdtvlakkrvdslqltreqmltnrfndlldrmdimfgstgsadieewmagvawlhcllpkmdsvvydflkcmvynipkkrywlfkgpidsgkttlaaallelcggkalnvnlpldrlnfelgvaidqflvvfedvkgtggesrdlpsgqginnldnlrdyldgsvkvnlekkHlnkrtqifppgivtmneysvpktlqarfvkqidfrpkdylkhclersefllekriiqsgialllmliwyrpvaefaqsiqsrivewkerldkefslsvyqkmkfnvamgigvld
interface signature	FSNRTRQWNH/NRTRRH

Estimated binding specificities ?

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# IC=10.253 IC/col=0.854 n_of_columns=12

specificity:

A |   9   0   0   0   9   0   8  24  24   0   0   9
C |   7   0  96  82   7  96   0  24  24   0  96   7
G |  73  96   0   7   7   0   0  24  24  96   0   7
T |   7   0   0   7  73   0  88  24  24   0   0  73

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updated Wed Jun 24 20:55:50 2026