interface graph thumbnail
legend  pdf

structure nameRAP1/DNA COMPLEX
(DNA-binding protein RAP1)
referenceLe Bihan et al.
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=2.99, R-factor=0.208)
structural superfamilyHomeodomain-like;
sequence familyRap1, DNAbinding; Myblike DNAbinding domain;
reference complex6ldm_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKHNSRHRYKNRDRKTRTPN

Estimated binding specificities ?

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# IC=16.308 IC/col=1.087 n_of_columns=15 specificity:   
A |   0   0   0   0   0  10   6   5   0   0   0   5   0   5   1
C |   0   0   0   0   0  11   5   6   0   0   0  11   0   5   5
G |   0  96  96   0  96   5  80   5  96  96  96  10  96   6   0
T |  96   0   0  96   0  70   5  80   0   0   0  70   0  80  90
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updated Sat Aug 2 06:29:00 2025