4gfb_A : 3D-footprint complex

structure name	RAP1/DNA COMPLEX (DNA-binding protein RAP1)
reference	Le Bihan et al.
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.99, R-factor=0.208)
structural superfamily	Homeodomain-like;
sequence family	Rap1, DNAbinding; Myblike DNAbinding domain;
reference complex	6ldm_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4gfb_A interface=3,28,44,45,47,48,51,53,89,163,166,167,170,171,202,204,211,212,214, hnKasftdeedefildvvrknptrrttHtlydeishyvpnhtgNSiRHrfRvYlskrleyvyevdkfgklvrdddgnliktkvlppsiKrkfsadedytlaiavkkqfyrdlfqidpdtgrslitvpgsepnfaayrtqsrrgpiareffkhfaeehaahteNawRDrfRKfllaygiddyisyyeaekaqnrepepmknlTnRprpgvpTPgNynsa
interface signature	KHNSRHRYKNRDRKTRTPN

Estimated binding specificities ?

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# IC=16.427 IC/col=1.095 n_of_columns=15

specificity:

A |   0   0   0   0   0   5   5   5   0   0   0   5   0   5   0
C |   0   0   0   0   0   5   6   5   0   0   0  10   0   5   5
G |   0  96  96   0  96  10  80   6  96  96  96  12  96   6   1
T |  96   0   0  96   0  76   5  80   0   0   0  69   0  80  90

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updated Mon Dec 16 23:28:52 2024