4jl3_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MS6564-DNA COMPLEX
reference	Yang et al. J.Biol.Chem. 288 23687 2013
source	Mycobacterium smegmatis
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	4jl3_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4jl3_A interface=27,37,38,39,41, seksrvaiveatralllergfdglsiEavaakagvgKQTiYrwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglrp > 4jl3_B interface=1,29,39,40,41,43,44, RrseksrvaiveatralllergfdglsiEavaakagvgKQTiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglrp > 4jl3_C interface=2,31,41,42,45,46, gSrrseksrvaiveatralllergfdglsiEavaakagvgKQtiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglr > 4jl3_D interface=1,29,39,40,43,44, RrseksrvaiveatralllergfdglsiEavaakagvgKQtiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglr
interface signature	EKQTY/REKQTYR/SEKQYR/REKQYR

Estimated binding specificities ?

readout + contact

# IC=20.820 IC/col=0.946 n_of_columns=22

specificity:

A |   0  96   0  24  24   0  96   0   0   0  96   2   4   0   2   0   7   2  10  24   9   7
C |   0   0  96  24  24   0   0  96   0   0   0  90  88   0   2  96  12  83   7  24   7   7
G |  96   0   0  24  24  96   0   0  96   0   0   2   2  96   2   0  10   9  72  24   5   7
T |   0   0   0  24  24   0   0   0   0  96   0   2   2   0  90   0  67   2   7  24  75  75

scan!

home
updated Wed Jun 24 21:38:05 2026