4jl3_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MS6564-DNA COMPLEX
reference	Yang et al. J.Biol.Chem. 288 23687 2013
source	Mycobacterium smegmatis
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	4jl3_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4jl3_A interface=27,37,38,39,41, seksrvaiveatralllergfdglsiEavaakagvgKQTiYrwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglrp > 4jl3_B interface=1,29,39,40,41,43,44, RrseksrvaiveatralllergfdglsiEavaakagvgKQTiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglrp > 4jl3_C interface=2,31,41,42,45,46, gSrrseksrvaiveatralllergfdglsiEavaakagvgKQtiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglr > 4jl3_D interface=1,29,39,40,43,44, RrseksrvaiveatralllergfdglsiEavaakagvgKQtiYRwwpsrhalvadvlledadkilarmpktddvtadlaswagtlaaalttrrghamlktlmaaslehedtaarlregfsrpliesvrdrlrdedidadhaqaaadallgavvnavlsegrsysrqraetsariivaglr
interface signature	EKQTY/REKQTYR/SEKQYR/REKQYR

Estimated binding specificities ?

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# IC=18.072 IC/col=1.004 n_of_columns=18

specificity:

A |   0  96   0  24  24   0  96   0   0   0  96   6   6   0   6   0   6   6
C |   0   0  96  24  24   0   0  96   0   0   0  78  78   0   6  96   6  78
G |  96   0   0  24  24  96   0   0  96   0   0   6   6  96   6   0   6   6
T |   0   0   0  24  24   0   0   0   0  96   0   6   6   0  78   0  78   6

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updated Mon Sep 9 22:42:22 2024