interface graph thumbnail
legend  pdf

structure nameBINARY COMPLEX OF 9N DNA POLYMERASE IN THE REPLICATIVE STATE
(DNA POLYMERASE)
referenceDiederichs et al. Chembiochem 14 1058 2013
sourceTHERMOCOCCUS
experimentX-ray (resolution=2.28, R-factor=0.198)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B; DNA polymerase family B, exonuclease do;
reference complex5omv_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYYKRD

Estimated binding specificities ?

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# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |  13   0  13   0
C |  13   0  57   0
G |  16  96  13  96
T |  54   0  13   0
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Thu Sep 12 19:39:00 2024