interface graph thumbnail
legend  pdf

structure nameBINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA
(PROTEIN LARGE FRAGMENT OF DNA POLYMERASE I)
referenceWaksman et al. 'EMBO 17 7514 1998
sourceThermus aquaticus
experimentX-ray (resolution=2.50, R-factor=0.227)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRNEYNQH

Estimated binding specificities ?

contactlogo
# IC=2.383 IC/col=0.596 n_of_columns=4 specificity:   
A |   7   7   7   8
C |   7  66   9  81
G |  73   7  73   0
T |   9  16   7   7
scan!

home
updated Sat Aug 2 06:51:24 2025