4lmg_AD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AFT2 IN COMPLEX WITH DNA
reference	Schuermann et al. Proc.Natl.Acad.Sci.USA 111 4043 2014
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.20, R-factor=?)
reference complex	4lmg_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lmg_A interface=35,36,37,40, lihldpvpsfedrheikpwlqkifypqgidivieRSDssKvtfkcrsvacpfriraaysvrlqkwnvvvmnnihshelrfdlitktddykkfkenlrqkndekaiktfdeleykaslnlp > 4lmg_D interface=35,36,37,40, lihldpvpsfedrheikpwlqkifypqgidivieRSDssKvtfkcrsacpfriraaysvrlqkwnvvvmnnihshelrfdlitktddykkfkenlrqkndekaiktfdeleykaslnlpl
interface signature	RSDK/RSDK

Estimated binding specificities ?

readout + contact

# IC=7.099 IC/col=0.789 n_of_columns=9

specificity:

A |   0   0   0  16  24  24  54   0   0
C |   0   0   0  13  24  24  13  96   0
G |  96  96  96  13  24  24  16   0   0
T |   0   0   0  54  24  24  13   0  96

scan!

home
updated Mon Sep 9 23:00:53 2024