4lmg_BC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AFT2 IN COMPLEX WITH DNA
reference	Schuermann et al. Proc.Natl.Acad.Sci.USA 111 4043 2014
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.20, R-factor=?)
reference complex	4lmg_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4lmg_B interface=35,36,37, lihldpvpsfedrheikpwlqkifypqgidivieRSDsskvtfkcrsvacpfriraaysvrlqkwnvvvmnnihshelrfdlitktddykkfkenlrqkndekaiktfdeleykaslnlpl > 4lmg_C interface=35,36,37,40, lihldpvpsfedrheikpwlqkifypqgidivieRSDssKvtfkcrsvacpfriraaysvrlqkwnvvvmnnihshelrfdlitktddykkfkenlrqkndekaiktfdeleykaslnlpl
interface signature	RSD/RSDK

Estimated binding specificities ?

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# IC=6.791 IC/col=0.755 n_of_columns=9

specificity:

A |  96   0  10  24  24  64   0   0  10
C |   0   0  10  24  24  10  96  96  76
G |   0  96  12  24  24  10   0   0  10
T |   0   0  64  24  24  12   0   0   0

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updated Mon Sep 9 23:00:43 2024