4nqa_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LIGANDED HRXR-ALPHA/HLXR-BETA HETERODIMER ON DNA
reference	Gustafsson et al. Nat.Struct.Mol.Biol. 21 277 2014
source	HOMO SAPIENS
experiment	X-ray (resolution=3.10, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4nqa_A interface=26,29,33,34, asftkhicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeerqrgssanedmpverileaelavepktetyeanmglnpsspndpvtnicqaadkqlftlvewakriphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemle > 4nqa_B interface=4,32,35,39,40, kkgPapkmlghelcrvcgdkasgfhynvlscEgcKgffRRsvvrggarryacrgggtcqmdafmrrkcqqcrlrkckeagmreqcvlseeqirkkkirkqqqqesqsqsqspvgpqgsssqgsgegegvqltaaqelmiqqlvaaqlqcnkrsfsdqpkvtpwplgadpqsrdarqqrfahftelaiisvqeivdfakqvpgflqlgredqiallkastieimlletarrynhetecitflkdftyskddfhraglqvefinpifefsramrrlglddaeyalliainifsadrpnvqepgrvealqqpyveallsytrikrpqdqlrfprmlmklvslrtlssvhseqvfalrlqdkklppllseiwd
interface signature	EKKR/PEKRR

Estimated binding specificities ?

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# IC=11.410 IC/col=0.713 n_of_columns=16

specificity:

A |  78   0   0   6  24  96  24  24  24  24  78   6   0   6   0  96
C |   6   0   0   6  24   0  24  24  24  24   6   6   0   6  96   0
G |   6  96  96   6  24   0  24  24  24  24   6  78  96   6   0   0
T |   6   0   0  78  24   0  24  24  24  24   6   6   0  78   0   0

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updated Mon Sep 9 23:05:49 2024