4omy_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SEMET NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AT DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.06, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4omy_A interface=52,56, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsqSalsQhlsklraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4omy_B interface=51,52,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsQSalSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SQ/QSSQQ

Estimated binding specificities ?

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# IC=8.262 IC/col=0.516 n_of_columns=16

specificity:

A |   3   1  96   0  24  24  24  24  24  24   3   0   3  82  24  72
C |  17   3   0   0  24  24  24  24  24  24  59   0   0   6  24   3
G |  13   3   0  96  24  24  24  24  24  24  17   0  89   5  24  18
T |  63  89   0   0  24  24  24  24  24  24  17  96   4   3  24   3

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updated Mon Jan 5 10:40:10 2026