4omy_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SEMET NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AT DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.06, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4omy_A interface=52,56, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsqSalsQhlsklraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4omy_B interface=51,52,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsQSalSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SQ/QSSQQ

Estimated binding specificities ?

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# IC=8.415 IC/col=0.526 n_of_columns=16

specificity:

A |   5   0  96   0  24  24  24  24  24  24   5   0   5  74  24  69
C |  11   5   0   0  24  24  24  24  24  24  69   0   1  10  24  12
G |   0   5   0  96  24  24  24  24  24  24  10   0  90   5  24  10
T |  80  86   0   0  24  24  24  24  24  24  12  96   0   7  24   5

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updated Wed Jul 30 02:29:21 2025