4omy_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SEMET NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AT DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.06, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4omy_A interface=52,56, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsqSalsQhlsklraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4omy_B interface=51,52,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsQSalSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SQ/QSSQQ

Estimated binding specificities ?

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# IC=8.319 IC/col=0.520 n_of_columns=16

specificity:

A |   4  24   4   5  96   8  24  24  24  24  24  24   0   0  91  64
C |  12  24   4  87   0  16  24  24  24  24  24  24  96   0   4  16
G |   0  24  16   0   0  64  24  24  24  24  24  24   0   0   0  12
T |  80  24  72   4   0   8  24  24  24  24  24  24   0  96   1   4

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updated Mon Sep 9 23:15:52 2024