4omy_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SEMET NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AT DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.06, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4omy_C interface=52,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsqSalSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg > 4omy_D interface=52,56,60, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsqSalsQhlsKlraqnlvstrrdaqtiyyssssdsvmkilgalseiyg
interface signature	SSQQ/SQK

Estimated binding specificities ?

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# IC=11.462 IC/col=0.603 n_of_columns=19

specificity:

A |  13  96  68  24  24   0   0  96   0  24  24  24  24  24  24   0   0  61  96
C |  13   0   6  24  24   0  83   0   0  24  24  24  24  24  24  96   0  20   0
G |  61   0  16  24  24   0   0   0  96  24  24  24  24  24  24   0   0   9   0
T |   9   0   6  24  24  96  13   0   0  24  24  24  24  24  24   0  96   6   0

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updated Mon Sep 9 23:16:04 2024