4on0_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4on0_A interface=50,52,53,55,56,60, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglSqSAlSQhlsKlraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4on0_B interface=50,51,52,53,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglSQSAlSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SSASQK/SQSASQQ

Estimated binding specificities ?

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# IC=12.404 IC/col=0.653 n_of_columns=19

specificity:

A |   0   4  96   0  24  24  24  24  24  24   4   0   0  81   0   0  24   9  79
C |   0   4   0   0  24  24  24  24  24  24  72   0   0  11   0   4  24   9   4
G |   0   0   0  96  24  24  24  24  24  24   9   0  92   0   0  88  24  11   9
T |  96  88   0   0  24  24  24  24  24  24  11  96   4   4  96   4  24  67   4

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updated Mon Sep 9 23:16:12 2024