4on0_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4on0_C interface=50,52,53,55,56,60, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglSqSAlSQhlsKlraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4on0_D interface=51,52,53,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsQSAlSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SSASQK/QSASQQ

Estimated binding specificities ?

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# IC=11.610 IC/col=0.611 n_of_columns=19

specificity:

A |   3  69  24   3  96   3  71  96  10  24  24  24  24  24  24   0   0  89  78
C |  18   6  24  89   0   6  18   0   0  24  24  24  24  24  24  96   0   3  12
G |  68   9  24   4   0   3   3   0  86  24  24  24  24  24  24   0   0   4   3
T |   7  12  24   0   0  84   4   0   0  24  24  24  24  24  24   0  96   0   3

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updated Mon Sep 9 23:16:23 2024