4on0_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX WITH OLIGO AA DNA
reference	Krishnan et al. Proc.Natl.Acad.Sci.USA 111 6509 2014
source	SINORHIZOBIUM FREDII
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	4on0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4on0_C interface=50,52,53,55,56,60, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglSqSAlSQhlsKlraqnlvstrrdaqtiyyssssdsvmkilgalseiyg > 4on0_D interface=51,52,53,55,56,74, qplspekheeaeiaagflsamanpkrllildslvkeemavgalankvglsQSAlSQhlsklraqnlvstrrdaQtiyyssssdsvmkilgalseiyg
interface signature	SSASQK/QSASQQ

Estimated binding specificities ?

readout + contact

# IC=9.231 IC/col=0.577 n_of_columns=16

specificity:

A |  10   1  96   0  24  24  24  24  24  24   1   0   4  54   0   0
C |   4   4   0   0  24  24  24  24  24  24  86   0   4   9   0   9
G |   9   9   0  96  24  24  24  24  24  24   0   0  36  22   0  82
T |  73  82   0   0  24  24  24  24  24  24   9  96  52  11  96   5

scan!

home
updated Mon Jan 5 10:40:48 2026