interface graph thumbnail
legend  pdf

structure nameFADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM VIBRIO CHOLERAE, IN COMPLEX WITH DNA
(Fatty acid metabolism regulator protein)
referenceKull et al. 'Nat 6 6032 2015
sourceVibrio cholerae
experimentX-ray (resolution=3.21, R-factor=0.219)
structural superfamilyGntR ligand-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyFadR Cterminal domain; Bacterial regulatory proteins, gntR family;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureERTRTTREH

Estimated binding specificities ?

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# IC=3.915 IC/col=0.652 n_of_columns=6 specificity:   
A |   0   0  19  24  72  61
C |   0   0   8  24   8   8
G |  96  96   8  24   8  19
T |   0   0  61  24   8   8
scan!

Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 18:36:35 2024