4ptf_A : 3D-footprint complex

structure name	TERNARY CRYSTAL STRUCTURE OF YEAST DNA POLYMERASE EPSILON WITH TEMPLATE G (DNA polymerase epsilon catalytic subunit A)
reference	Rajashankar et al. 'Plos 9 e94835 2014
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.81, R-factor=0.186)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family B, exonuclease do;
reference complex	4m8o_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ptf_A interface=894,915, yalsaqqllnaskiddidsmmgferyvppqyngrfdakdidqipgrvgwltnmhatlvsqetnqgisgvdfyfldeeggsfkstvvydpyffiacndesrvndveelvkkylesclkslqiirkedltmdnhllglqktliklsfvnsnqlfearkllrpilqdnarniynkvdakhliedireydvpyhvrvsidkdirvgkwykvtqqgfiedtrkiafadpvvmafdiettkpplkfpdsavdqimmisymidgegflitnreiisediedfeytpkpeypgfftifnendevallqrffehirdvrptvistfngdffdwpfihnrskihgldmfdeigfapdaegeykssycshmdcfrwvkrdsylpqgsqglkavtqsklgynpieldpelmtpyafekpqhlseysvsdavatyylymkyvhpfifslctiiplnpdetlrkgtgtlcemllmvqayqhnillpnkhtdpierfydghllesetyvgghvesleagvfrsdlknefkidpsaidellqelpealkfsvevenkssvdkvtnfeeiknqitqkllelkennirnelpliyhvdvasmypnimttnrlqpdsikaerdarklkwawrgeffpskmdeynmikralqnetfpnknkfskkkvltfdelsyadqvihikkrlteysrkvyhrvkvseivereaivcqrenpfyvdtvksfrdrryefkglaktwkgnlskidpsdkhardeakkmivlydslqlahkvilnsfygyvmrkgsrwysmemagitcltgatiiqmaralvervgrpleldtdgiwcilpksfpetyfftlengkklylsypcsmlnyrvhqkftnhqyqelkdplnyiyethsentiffevdgpykamilpsskeegkgikKryavfnedgslaelkgfelkRrgelqliknfqsdifkvflegdtlegcysavasvcnrwldvldshglmlededlvslicenrsmsktlkeyegqkstsittarrlgdflgedmvkdkglqckyiisskpfnapvteraipvaifsadipikrsflrrwtldpsledldirtiidwgyyrerlgsaiqkiitipaalqgvsnpvprvehpdwlkrkia
interface signature	KR

Estimated binding specificities ?

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# IC=2.386 IC/col=0.596 n_of_columns=4

specificity:

A |   7  75   7   7
C |   7   7   7   7
G |   7   7  73  75
T |  75   7   9   7

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updated Thu Sep 12 19:57:48 2024