4qju_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DNA-BOUND NUCLEOID ASSOCIATED PROTEIN, SAV1473
reference	Yoon et al. 'Acta 70 3273 2014
source	Staphylococcus aureus
experiment	X-ray (resolution=2.16, R-factor=?)
structural superfamily	IHF-like DNA-binding proteins;
reference complex	4qju_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4qju_A interface=58,61,63,64,68, mnktdlinavaeqadltkkeagsavdavfesiqnslakgekvqligfgnfevreraaRkgRnPQtgkEidipaskvpafkagkalkdavk > 4qju_B interface=43,45,58,61,63,68, mnktdlinavaeqadltkkeagsavdavfesiqnslakgekvQlIgfgnfevreraaRkgRnPqtgkEidipaskvpafkagkalkdavk
interface signature	RRPQE/QIRRPE

Estimated binding specificities ?

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# IC=7.306 IC/col=0.430 n_of_columns=17

specificity:

A |   0  24  24  24   0  96  24  24  60  24  18  24  18  24  24   0   0
C |   0  24  24  24   0   0  24  24  12  24  12  24  18  24  24   0   0
G |   0  24  24  24   0   0  24  24  18  24  12  24  18  24  24   0  96
T |  96  24  24  24  96   0  24  24   6  24  54  24  42  24  24  96   0

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updated Mon Sep 9 23:30:22 2024