4qyz_ABCDEFGHIJ : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A CRISPR RNA-GUIDED SURVEILLANCE COMPLEX, CASCADE, BOUND TO A SSDNA TARGET
reference	Mulepati et al. Science 345 1479 2014
source	ESCHERICHIA COLI
experiment	X-ray (resolution=3.03, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4qyz_A interface=445,447, mnllidnwipvrprnggkvqiinlqslycsrdqwrlslprddmelaalallvcigqiiapakddvefrhrimnpltedefqqliapwidmfylnhaehpfmqtkgvkandvtpmekllaealcggctaialfnqanqapgfgggfksglrggtpvttfvrgidlrstvllnvltlprlqkqfpneshtenqptwikpiksnesipassigfvrglfwqpahielcdpigigkcsccgqesnlrytgflkekftftvnglwphphspclvtvkkgeveekflafttsapswtqisrvvvdkingnrvaavvnqfrniapqsplelimggyrlerrhdvlmfnqgwqqygnvineivtvglgyktalrkalytfaegfknkdfkgagvsvhetaerhfyrqsellipdvlanvnfsqadeviadlrdklhqlcemlfnqsvapyahHpKlistlalaratlykhlrelkp > 4qyz_B interface=25,92,114, deidamalyrawqqldngscaqirRvsepdelrdipafyrlvqpfgwenprhqqallrmvfclsagknvirhqtgislgralansgrinerRifqliradrtadmvqlrrlltHaepvldwplmarmltwwgkrerqqlledfvlttnkn > 4qyz_C interface=21,25,91,92,114, deidamalyrawqqldngscAqirRvsepdelrdipafyrlvqpfgwenprhqqallrmvfclsagknvirhqtgislgralansgrineRRifqliradrtadmvqlrrlltHaepvldwplmarmltwwgkrerqqlledfvlttnkn > 4qyz_D interface=110,166,168, msnfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpkqmptleqlkswvrnng > 4qyz_E interface=110,166,168,199,211,213,214, msnfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidWftavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpitaqvkqmptleqlkswvrnng > 4qyz_F interface=110,166,168,199,211,213,214, msnfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrMaTsgmmtelgkvdgamsiahaitthqvdsdidWftavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpitaqvkqmptleqlkswvrnnge > 4qyz_G interface=109,110,168,200,201,211,213,214, msnfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisaDAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrmaTsgmmtelgkvdgamsiahaitthqvdsdidwFTavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpqvkqmptleqlkswvrnngea > 4qyz_H interface=110,168,199,200,209,211,213,214, msnfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigesslrtihlaqlrdvlrqklgerfdqkiidktlallsgksvdeaekisadAvtpwvvgeiawfceqvakaeadnlddkkllkvlkediaairvnlqqgvdialsgrmaTsgmmtelgkvdgamsiahaitthqvdsdidWFtavddlqeQgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsditaqvkqmptleqlkswvrnnge > 4qyz_I interface=92,93,104,106,107, msnfinihvlishspsclnrddmnmqkdaifggkrrvrissqslkramrksgyyaqnigeqgvdialsgrmdgamsiahaitthqvdsdidWFtavddlqeqgSaHLgtqefssgvfyryaninlaqlqenlggasreqaleiathvvhmlatevpgakqrtyaafnpadmvmvnfsdmplsmanafekavkakdgflqpsiqafnqywdrvangyglngaaaqfslsdvdpitaqvkqmptleqlkswvrnngea > 4qyz_J interface=81,87, mrsylilrlagpmqawgqptgtrptgrfptrsgllgllgaclgiqrddtsslqalsesvqfavrcdelilrrvsvtglrdYhtvliQtwreylcdasftvalwltphatmviselekavlkprytpylgrrscplthplflgtcqpqkallnyepvggdiyseesvhlkftardepmitlprqfasrewyvikgg
interface signature	HK/RRH/ARRRH/AMT/AMTWSHL/AMTWSHL/DATFTSHL/ATWFQSHL/WFSHL/YQ

Estimated binding specificities ?

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# IC=33.749 IC/col=1.089 n_of_columns=31

specificity:

A |  96   0  96   0   0  24   0  96   0  96   0  24   0   0  96   0   0  13   0  96   0   0   0  24   0   0  96   0  16  24   0
C |   0  96   0   0  96  24  96   0  96   0   0  24   0  96   0   0   0  54  96   0  96   0   0  24   0  96   0  96  13  24   0
G |   0   0   0  96   0  24   0   0   0   0   0  24  96   0   0   0   0  16   0   0   0   0   0  24   0   0   0   0  13  24  96
T |   0   0   0   0   0  24   0   0   0   0  96  24   0   0   0  96  96  13   0   0   0  96  96  24  96   0   0   0  54  24   0

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updated Mon Nov 28 23:21:02 2022