4r4e_B : 3D-footprint complex

structure name	STRUCTURE OF GLNR-DNA COMPLEX (HTH-type transcriptional regulator GlnR)
reference	'Genes 29 451 2015
source	Bacillus subtilis subsp. subtilis
experiment	X-ray (resolution=2.57, R-factor=0.254)
structural superfamily	Putative DNA-binding domain;
sequence family	MerR family regulatory protein;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4r4e_B interface=26,29,46, msdnirrsmplfpigivmqltelsaRqiRyyeenglifpartegnRrlfsfhdvdklleikhlieqgvnmagikqilakaeaep
interface signature	RRR

Estimated binding specificities ?

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# IC=4.475 IC/col=0.639 n_of_columns=7

specificity:

A |  13   0  24  13  24  96   0
C |  13   0  24  13  24   0  96
G |  13   0  24  16  24   0   0
T |  57  96  24  54  24   0   0

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Dendrogram of similar interfaces ?

matrix format

  
  RART----       +----------4r24_B    
                 ! 
  RGRTYTKT   L   !           +7tea_B    
               --4         +-1 
  RGHTHCYG   L   !       +-2 +1r8d_B    
                 !       ! ! 
  KGQGRT--   L   +-------3 +5i44_I    
                         ! 
  RCRT----               +--7tec_A

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updated Sat Jan 10 07:25:59 2026