4r4e_B : 3D-footprint complex

structure name	STRUCTURE OF GLNR-DNA COMPLEX (HTH-type transcriptional regulator GlnR)
reference	'Genes 29 451 2015
source	Bacillus subtilis subsp. subtilis
experiment	X-ray (resolution=2.57, R-factor=0.254)
structural superfamily	Putative DNA-binding domain;
sequence family	MerR family regulatory protein;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4r4e_B interface=26,29,46, msdnirrsmplfpigivmqltelsaRqiRyyeenglifpartegnRrlfsfhdvdklleikhlieqgvnmagikqilakaeaep
interface signature	RRR

Estimated binding specificities ?

readout + contact

# IC=5.807 IC/col=0.830 n_of_columns=7

specificity:

A |   0   0  24  57  13   0  96
C |   0   0  24  13  13   0   0
G |  96   0  24  13  54   0   0
T |   0  96  24  13  16  96   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RART----       +----------4r24_B    
                 ! 
  RGRTYTKT   L   !           +7tea_B    
               --4         +-1 
  RGHTHCYG   L   !       +-2 +1r8d_B    
                 !       ! ! 
  KGQGRT--   L   +-------3 +5i44_I    
                         ! 
  RCRT----               +--7tec_A

home
updated Sun Aug 3 08:24:56 2025