interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF R.NGOAVII RESTRICTION ENDONUCLEASE B3 DOMAIN WITH COGNATE DNA
(Restriction endonuclease R.NgoVII)
referenceTamulaitiene et al. 'Nucleic 42 14022 2014
sourceNeisseria gonorrhoeae
experimentX-ray (resolution=2.70, R-factor=0.222)
redundant complexes4rd5
reference complex4rd5_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRREEISDYKNRL

Estimated binding specificities ?

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# IC=6.358 IC/col=0.908 n_of_columns=7 specificity:   
A |  40   1   0   0   0   3  61
C |  20   2  95   1   0  90  13
G |  19  91   0  95  94   1  13
T |  17   2   1   0   2   2   9
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updated Fri Jan 9 01:35:32 2026