4rod_AB : 3D-footprint complex

structure name	HUMAN TFIIB-RELATED FACTOR 2 (BRF2) AND TBP BOUND TO TRNAU1 PROMOTER
reference	Guthertz et al. 'Cell(Cambridge,Mass.)' 163 1375 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Cyclin-like;Zinc beta-ribbon;
reference complex	8ity_V
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4rod_A interface=43,45,195, srsqqrglrrvrdlcrvlqlpptfedtavayyqqayrhsgirAaRlqkkevlvgccvlitcrqhnwpltmgaictllyadldvfsstymqivkllgldvpslclaelvktycssfklfqaspsvpakyvedkekmlsrtmqlvelanetwlvtgrhplpvitaatflawqslqpadrlscslarfcklanvdlpYpassrlqellavllrmaeqlawlrvlrldkrsvvkhigdllqhrqslvrsafrdglllppcmlkspkricpvppvstvtgdenisdseieqylrtpqevrdfqraqa > 4rod_B interface=10,12,40,55,57,63,65,100,102,131,132,146,148,154,156, psgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkg
interface signature	ARY/NVFLFVTNVFPLFVT

Estimated binding specificities ?

contact

# IC=12.313 IC/col=0.821 n_of_columns=15

specificity:

A |  72   4  24   4  96   4  96   0  91  96   0  24  24   4   4
C |  11   4  24   2   0   4   0   0   1   0   0  24  24   4  84
G |   4  76  24   4   0   7   0   0   0   0  96  24  24   7   4
T |   9  12  24  86   0  81   0  96   4   0   0  24  24  81   4

scan!

home
updated Fri Dec 13 21:21:44 2024