4rod_AB : 3D-footprint complex

structure name	HUMAN TFIIB-RELATED FACTOR 2 (BRF2) AND TBP BOUND TO TRNAU1 PROMOTER
reference	Guthertz et al. 'Cell(Cambridge,Mass.)' 163 1375 2015
source	HOMO SAPIENS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	TATA-box binding protein-like;Cyclin-like;Zinc beta-ribbon;
reference complex	1cdw_A 8ity_V
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4rod_A interface=43,45,195, srsqqrglrrvrdlcrvlqlpptfedtavayyqqayrhsgirAaRlqkkevlvgccvlitcrqhnwpltmgaictllyadldvfsstymqivkllgldvpslclaelvktycssfklfqaspsvpakyvedkekmlsrtmqlvelanetwlvtgrhplpvitaatflawqslqpadrlscslarfcklanvdlpYpassrlqellavllrmaeqlawlrvlrldkrsvvkhigdllqhrqslvrsafrdglllppcmlkspkricpvppvstvtgdenisdseieqylrtpqevrdfqraqa > 4rod_B interface=10,12,40,55,57,63,65,100,102,131,132,146,148,154,156, psgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkg
interface signature	ARY/NVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=13.511 IC/col=0.844 n_of_columns=16

specificity:

A |   1  83  24  24   0   0   0  96   0  84   0  79  24   8   4   4
C |   4   4  24  24  96   0   0   0   0   4   0   9  24  70   4   8
G |  91   4  24  24   0   0   0   0   0   4   0   4  24   6   8  80
T |   0   5  24  24   0  96  96   0  96   4  96   4  24  12  80   4

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updated Wed Jul 30 02:50:45 2025