4s04_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE PMRA IN COMPLEX WITH PMRA BOX DNA
reference	Hsiao et al. 'Nat 6 8838 2015
source	Klebsiella pneumoniae
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4s04_E interface=188,192,193,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepatNtleVHiHnlrekigksrirtvRgfgymlann > 4s04_F interface=187,188,191,192,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVhiHnlrekigksrirtvRgfgymlann
interface signature	NVHHR/TNEVHR

Estimated binding specificities ?

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# IC=12.517 IC/col=0.695 n_of_columns=18

specificity:

A |   3   2  24   0   0   0  94  24  24  24  15  72  71  24  57   0  75  96
C |   0   1  24  92   0   0   1  24  24  24  19   7  12  24  17   0   0   0
G |   1   1  24   1   0   0   0  24  24  24   7  10   0  24  13   0   0   0
T |  92  92  24   3  96  96   1  24  24  24  55   7  13  24   9  96  21   0

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updated Wed Jul 30 02:51:41 2025