4s04_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE PMRA IN COMPLEX WITH PMRA BOX DNA
reference	Hsiao et al. 'Nat 6 8838 2015
source	Klebsiella pneumoniae
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4s04_E interface=188,192,193,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepatNtleVHiHnlrekigksrirtvRgfgymlann > 4s04_F interface=187,188,191,192,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVhiHnlrekigksrirtvRgfgymlann
interface signature	NVHHR/TNEVHR

Estimated binding specificities ?

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# IC=12.681 IC/col=0.704 n_of_columns=18

specificity:

A |   1   3  24   0   0   0  90  24  24  24  13  88  72  24  51   0  67  96
C |   4   1  24  94   0   0   1  24  24  24   9   7   7  24  13   0   0   0
G |   1   0  24   1   0   0   4  24  24  24  13   0   8  24  19   0   0   0
T |  90  92  24   1  96  96   1  24  24  24  61   1   9  24  13  96  29   0

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updated Fri Dec 13 21:22:56 2024