4s04_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE PMRA IN COMPLEX WITH PMRA BOX DNA
reference	Hsiao et al. 'Nat 6 8838 2015
source	Klebsiella pneumoniae
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4s04_E interface=188,192,193,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepatNtleVHiHnlrekigksrirtvRgfgymlann > 4s04_F interface=187,188,191,192,195,210, mkilvieddalllqglilamqsegyvcdgvstaheaalslasnhyslivldlglpdedglhflsrmrrekmtqpvliltardtledrisgldtgaddylvkpfaleelnarirallrrhnnqgdneisvgnlrlnvtrrlvwlgetaldltpkeyallsrlmmkagspvhreilyndiysgdnepaTNtlEVhiHnlrekigksrirtvRgfgymlann
interface signature	NVHHR/TNEVHR

Estimated binding specificities ?

readout + contact

# IC=12.667 IC/col=0.704 n_of_columns=18

specificity:

A |   0  24  96  17  24   9  11  53  24  24  24   0  96  96   1  24  96  94
C |   0   1   0  15  24   1   9  13  24  24  24   0   0   0   0  24   0   2
G |   0   0   0  13  24  15   9  13  24  24  24   0   0   0  95  24   0   0
T |  96  71   0  51  24  71  67  17  24  24  24  96   0   0   0  24   0   0

scan!

home
updated Mon Sep 9 23:36:46 2024