4s0h_AB : 3D-footprint complex

structure name	TBX5 DB, NKX2.5 HD, ANF DNA COMPLEX
reference	Biochemistry 55 1702 2016
source	HOMO SAPIENS
experiment	X-ray (resolution=2.82, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4s0h_A interface=29,153,170,174, gikvflherelwlkfhevgtemiitkagRrmfpsykvkvtglnpktkyillmdivpaddhrykfadnkwsvtgkaepampgrlyvhpdspatgahwmrqlvsfqklkltnnhldpfghiilnsmhkyqprlhivkatafcthvfpetafiavTsyqnhkitqlkiennpFakgFrg > 4s0h_B interface=1,43,46,47,50, RvlfsqaqvyelerrfkqqrylsaperdqlasvlkltstqvkIwfQNrrYksk
interface signature	RTFF/RIQNY

Estimated binding specificities ?

contact

# IC=7.072 IC/col=0.544 n_of_columns=13

specificity:

A |   0  24   0   0  12   6  24  24  24  24   6  12   0
C |  96  24  90   0  12  78  24  24  24  24  12   6   0
G |   0  24   6   0   6   6  24  24  24  24  66  12  96
T |   0  24   0  96  66   6  24  24  24  24  12  66   0

scan!

home
updated Fri Dec 13 21:23:39 2024