interface graph thumbnail
legend  pdf

structure nameTHE COMPLEX OF SPO0J AND PARS DNA IN CHROMOSOMAL PARTITION SYSTEM
(PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB)
referenceHsiao et al. 'Proc. 112 6613 2015
sourceHELICOBACTER PYLORI
experimentX-ray (resolution=3.10, R-factor=0.254)
structural superfamilyKorB DNA-binding domain-like;ParB/Sulfiredoxin;
sequence familyParBlike nuclease domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureESRAANRKVRE

Estimated binding specificities ?

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# IC=8.472 IC/col=1.059 n_of_columns=8 specificity:   
A |   0   0   0   0  13   0  96  13
C |   0   0   0   0  54  96   0  57
G |   0  96   0   0  16   0   0  13
T |  96   0  96  96  13   0   0  13
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Fri Sep 13 18:48:09 2024