interface graph thumbnail
legend  pdf

structure nameTHE COMPLEX OF SPO0J AND PARS DNA IN CHROMOSOMAL PARTITION SYSTEM
(PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB)
referenceHsiao et al. 'Proc. 112 6613 2015
sourceHELICOBACTER PYLORI
experimentX-ray (resolution=3.10, R-factor=0.254)
structural superfamilyKorB DNA-binding domain-like;ParB/Sulfiredoxin;
sequence familyParBlike nuclease domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureESRAANRKVRE

Estimated binding specificities ?

readout + contactlogo
# IC=8.472 IC/col=1.059 n_of_columns=8 specificity:   
A |   0   0   0   0  13   0  96  13
C |   0   0   0   0  57  96   0  54
G |   0  96   0   0  13   0   0  13
T |  96   0  96  96  13   0   0  16
scan!

Dendrogram of similar interfaces ?

matrix format



home

updated Mon Jun 29 18:42:01 2026