4x4b_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 2.1 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4b_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4b_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4b_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4b_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=22.703 IC/col=0.688 n_of_columns=33

specificity:

A |   0   0   3  17  96   0   0  24  24  24  24  24   7   0  24   4   0   1   1   0  24  86  24  24  24  24  13   1   0  24  92   0  96
C |   0   0   0   7   0  96   1  24  24  24  24  24  17  94  24   1  55   7   1   0  24   4  24  24  24  24  21   3  96  24   1  96   0
G |   0  96   1  69   0   0   0  24  24  24  24  24  19   1  24  90   0  88   0  96  24   1  24  24  24  24  59   0   0  24   0   0   0
T |  96   0  92   3   0   0  95  24  24  24  24  24  53   1  24   1  41   0  94   0  24   5  24  24  24  24   3  92   0  24   3   0   0

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updated Mon Jan 5 11:37:41 2026