4x4c_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 6.2 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4c_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4c_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4c_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4c_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

readout + contact

# IC=23.454 IC/col=0.711 n_of_columns=33

specificity:

A |   0   0   0  24   0  90   3  24  24  24  24   3  24   0  91   1  28   3  24   0  84  24  24  24  24  24  88   0   0   1  88   0  96
C |   0   0   1  24   0   4  73  24  24  24  24   2  24  96   1  94   0  86  24   0   7  24  24  24  24  24   1   0   0  82   4  96   0
G |   0  96   5  24  96   1  13  24  24  24  24   1  24   0   1   1  67   4  24  96   4  24  24  24  24  24   4  96   0   4   3   0   0
T |  96   0  90  24   0   1   7  24  24  24  24  90  24   0   3   0   1   3  24   0   1  24  24  24  24  24   3   0  96   9   1   0   0

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updated Wed Jun 24 23:14:28 2026