4x4c_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 6.2 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4c_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4c_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4c_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4c_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

readout + contact

# IC=23.028 IC/col=0.698 n_of_columns=33

specificity:

A |   0   0   1  11  96   0   1  24  24  24  24  24   1   1  24   1   0   0   1   1  24  92  24  24  24  24  17   1   0  24  94   0  96
C |   0   0   4   1   0  96   7  24  24  24  24  24  11  94  24   1  73   3   3   1  24   1  24  24  24  24  13   3  96  24   1  96   0
G |   0  96   1  79   0   0   2  24  24  24  24  24  19   1  24  90   0  92   2  94  24   2  24  24  24  24  63   1   0  24   1   0   0
T |  96   0  90   5   0   0  86  24  24  24  24  24  65   0  24   4  23   1  90   0  24   1  24  24  24  24   3  91   0  24   0   0   0

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updated Wed Jul 30 03:20:39 2025