4x4d_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 10.3 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4d_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4d_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4d_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4d_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

readout + contact

# IC=23.614 IC/col=0.716 n_of_columns=33

specificity:

A |   0   0   0  24   0  96   3  24  24  24  24   1  24   0  96   0  38   2  24   1  59  24  24  24  24  24  94   0   0  15  94   0  96
C |   0   0   0  24   0   0  84  24  24  24  24   1  24  96   0  80   0  94  24   1  15  24  24  24  24  24   0   0   0  53   0  96   0
G |   0  96   0  24  96   0   1  24  24  24  24   1  24   0   0  15  58   0  24  92   9  24  24  24  24  24   1  96   0  15   1   0   0
T |  96   0  96  24   0   0   8  24  24  24  24  93  24   0   0   1   0   0  24   2  13  24  24  24  24  24   1   0  96  13   1   0   0

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updated Tue Sep 10 00:04:34 2024