4x4d_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 10.3 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4d_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4d_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4d_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4d_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

readout + contact

# IC=23.267 IC/col=0.705 n_of_columns=33

specificity:

A |   0   0   0  24   0  92   6  24  24  24  24   1  24   0  92   1   7   4  24   1  71  24  24  24  24  24  81   0   0   9  93   0  96
C |   0   0   1  24   0   1  78  24  24  24  24   0  24  96   1  88   0  90  24   1   9  24  24  24  24  24   3   0   0  69   1  96   0
G |   0  96   3  24  96   3   7  24  24  24  24   3  24   0   2   7  89   1  24  92   7  24  24  24  24  24  11  96   0   7   1   0   0
T |  96   0  92  24   0   0   5  24  24  24  24  92  24   0   1   0   0   1  24   2   9  24  24  24  24  24   1   0  96  11   1   0   0

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updated Wed Jul 30 03:21:02 2025