4x4d_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 10.3 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4d_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4d_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4d_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4d_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

readout + contact

# IC=23.691 IC/col=0.718 n_of_columns=33

specificity:

A |   0   0   1  15  96   0   1  24  24  24  24  24   1   0  24   1   0   0   1   1  24  89  24  24  24  24  13   2   0  24  93   0  96
C |   0   0   1   1   0  96   0  24  24  24  24  24  13  96  24   4  72   0   0   0  24   1  24  24  24  24  15   1  96  24   1  96   0
G |   0  96   4  80   0   0   1  24  24  24  24  24  17   0  24  90   0  96   3  94  24   1  24  24  24  24  65   1   0  24   1   0   0
T |  96   0  90   0   0   0  94  24  24  24  24  24  65   0  24   1  24   0  92   1  24   5  24  24  24  24   3  92   0  24   1   0   0

scan!

home
updated Mon Jan 5 11:38:45 2026