4x4e_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 14.4 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4e_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4e_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4e_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4e_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=23.184 IC/col=0.703 n_of_columns=33

specificity:

A |   0   0   3  17  96   0   0  24  24  24  24  24   5   1  24   4   0   1   0   0  24  90  24  24  24  24  19   1   0  24  92   0  96
C |   0   0   0   0   0  96   0  24  24  24  24  24  13  94  24   1  59   9   0   0  24   1  24  24  24  24  22   0  96  24   1  96   0
G |   0  96   1  70   0   0   0  24  24  24  24  24  23   1  24  90   0  86   0  96  24   4  24  24  24  24  55   1   0  24   2   0   0
T |  96   0  92   9   0   0  96  24  24  24  24  24  55   0  24   1  37   0  96   0  24   1  24  24  24  24   0  94   0  24   1   0   0

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updated Mon Jan 5 11:39:11 2026