4x4e_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 14.4 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4e_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4e_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4e_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4e_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

readout + contact

# IC=23.385 IC/col=0.709 n_of_columns=33

specificity:

A |   0   0   2  24   0  88   1  24  24  24  24   1  24   0  92   0  34   0  24   0  71  24  24  24  24  24  92   0   0   9  93   0  96
C |   0   0   1  24   0   1  80  24  24  24  24   0  24  96   3  82   0  94  24   0   5  24  24  24  24  24   1   0   0  65   1  96   0
G |   0  96   1  24  96   1   8  24  24  24  24   1  24   0   1  13  62   1  24  96  13  24  24  24  24  24   1  96   0  11   1   0   0
T |  96   0  92  24   0   6   7  24  24  24  24  94  24   0   0   1   0   1  24   0   7  24  24  24  24  24   2   0  96  11   1   0   0

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updated Wed Jun 24 23:15:30 2026