4x4f_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 20.6 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4f_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4f_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4f_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4f_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=23.269 IC/col=0.705 n_of_columns=33

specificity:

A |   0   0   0  17  96   0   1  24  24  24  24  24   5   0  24   0   0   1   0   0  24  94  24  24  24  24  19   0   0  24  96   0  96
C |   0   0   0   5   0  96   6  24  24  24  24  24  19  96  24   1  72  17   1   0  24   0  24  24  24  24  17   3  96  24   0  96   0
G |   0  96   0  65   0   0   1  24  24  24  24  24   7   0  24  95   0  78   3  96  24   1  24  24  24  24  55   1   0  24   0   0   0
T |  96   0  96   9   0   0  88  24  24  24  24  24  65   0  24   0  24   0  92   0  24   1  24  24  24  24   5  92   0  24   0   0   0

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updated Mon Jan 5 11:39:48 2026