4x4f_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 20.6 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4f_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4f_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4f_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4f_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

readout + contact

# IC=23.367 IC/col=0.708 n_of_columns=33

specificity:

A |   0   0   4  24   0  90   0  24  24  24  24   1  24   0  93   0  23   1  24   0  77  24  24  24  24  24  90   0   0   3  90   0  96
C |   0   0   1  24   0   1  71  24  24  24  24   0  24  96   1  83   0  90  24   0   7  24  24  24  24  24   4   0   0  73   4  96   0
G |   0  96   1  24  96   4  10  24  24  24  24   1  24   0   1  13  72   1  24  96   1  24  24  24  24  24   1  96   0   9   1   0   0
T |  96   0  90  24   0   1  15  24  24  24  24  94  24   0   1   0   1   4  24   0  11  24  24  24  24  24   1   0  96  11   1   0   0

scan!

home
updated Fri Dec 13 21:53:39 2024