4x4g_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 26.8 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4g_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4g_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4g_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4g_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=23.383 IC/col=0.709 n_of_columns=33

specificity:

A |   0   0   1  24   0  90   1  24  24  24  24   0  24   0  90   0  35   1  24   2  82  24  24  24  24  24  92   0   0   3  92   0  96
C |   0   0   4  24   0   1  69  24  24  24  24   0  24  96   0  80   0  89  24   1   3  24  24  24  24  24   1   0   0  87   1  96   0
G |   0  96   3  24  96   1  13  24  24  24  24   2  24   0   1  15  61   3  24  92   6  24  24  24  24  24   0  96   0   5   2   0   0
T |  96   0  88  24   0   4  13  24  24  24  24  94  24   0   5   1   0   3  24   1   5  24  24  24  24  24   3   0  96   1   1   0   0

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updated Tue Sep 10 00:05:56 2024