4x4g_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 26.8 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4g_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4g_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4g_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4g_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=23.080 IC/col=0.699 n_of_columns=33

specificity:

A |   0   0   0  12  96   0   0  24  24  24  24  24   8   1  24   1   1   0   1   4  24  90  24  24  24  24  12   1   1  24  92   0  96
C |   0   0   1   3   0  96   1  24  24  24  24  24   5  90  24   1  84   7   6   1  24   1  24  24  24  24   7   1  94  24   3  96   0
G |   0  96   1  74   0   0   1  24  24  24  24  24   9   1  24  90   0  89   1  90  24   0  24  24  24  24  76   6   1  24   0   0   0
T |  96   0  94   7   0   0  94  24  24  24  24  24  74   4  24   4  11   0  88   1  24   5  24  24  24  24   1  88   0  24   1   0   0

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updated Mon Jan 5 11:40:25 2026