4x4h_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 35.7 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4h_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4h_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4h_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4h_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=22.941 IC/col=0.695 n_of_columns=33

specificity:

A |   0   0   1   9  96   0   1  24  24  24  24  24   5   0  24   1   1   0   1   0  24  94  24  24  24  24  13   1   0  24  90   0  96
C |   0   0   1   7   0  96   1  24  24  24  24  24  11  94  24   0  71  11   4   0  24   2  24  24  24  24  11   1  96  24   1  96   0
G |   0  96   0  69   0   0   4  24  24  24  24  24  17   0  24  95   0  85   1  96  24   0  24  24  24  24  65   4   0  24   1   0   0
T |  96   0  94  11   0   0  90  24  24  24  24  24  63   2  24   0  24   0  90   0  24   0  24  24  24  24   7  90   0  24   4   0   0

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updated Mon Jan 5 11:41:02 2026