4x4i_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 44.6 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4i_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4i_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4i_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4i_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=23.465 IC/col=0.711 n_of_columns=33

specificity:

A |   0   0   1  11  96   0   1  24  24  24  24  24   0   0  24   1   0   0   1   2  24  91  24  24  24  24  11   1   0  24  90   0  96
C |   0   0   1   4   0  96   2  24  24  24  24  24   9  96  24   1  72   0   1   0  24   1  24  24  24  24  11   3  96  24   1  96   0
G |   0  96   4  80   0   0   3  24  24  24  24  24  16   0  24  90   0  96   6  94  24   1  24  24  24  24  71   1   0  24   4   0   0
T |  96   0  90   1   0   0  90  24  24  24  24  24  71   0  24   4  24   0  88   0  24   3  24  24  24  24   3  91   0  24   1   0   0

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updated Tue Sep 10 00:06:39 2024