4x4i_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 44.6 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4i_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4i_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4i_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4i_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=22.966 IC/col=0.696 n_of_columns=33

specificity:

A |   0   0   0  24   0  96  11  24  24  24  24   1  24   0  90   0  48   0  24   0  55  24  24  24  24  24  96   0   0  17  94   0  96
C |   0   0   0  24   0   0  59  24  24  24  24   0  24  96   5  80   0  94  24   1  15  24  24  24  24  24   0   0   0  53   0  96   0
G |   0  96   0  24  96   0  13  24  24  24  24   1  24   0   0  16  48   1  24  94  15  24  24  24  24  24   0  96   0  11   1   0   0
T |  96   0  96  24   0   0  13  24  24  24  24  94  24   0   1   0   0   1  24   1  11  24  24  24  24  24   0   0  96  15   1   0   0

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updated Mon Jan 5 11:41:40 2026