4x4i_ABCD : 3D-footprint complex

structure name	RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.ESP1396I: DOSE (DWD) 44.6 MGY
reference	McGeehan et al.
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4x4i_A interface=24,33,34,35,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTyiSgiernsRnltikslelimkglevsdvvffemlikeilk > 4x4i_B interface=33,34,35,36,38,42, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsrnltikslelimkglevsdvvffemlikeilkh > 4x4i_C interface=23,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtQedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 4x4i_D interface=24,33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	EDRTSR/DRTYSR/QDRTYSRR/EDRTYSRR

Estimated binding specificities ?

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# IC=22.992 IC/col=0.697 n_of_columns=33

specificity:

A |   0   0   0  24   0  89   1  24  24  24  24   4  24   0  92   1  36   0  24   1  65  24  24  24  24  24  95   0   0   9  94   0  96
C |   0   0   3  24   0   5  61  24  24  24  24   0  24  92   3  84   0  95  24   1   9  24  24  24  24  24   0   0   0  69   1  96   0
G |   0  96   1  24  96   1   7  24  24  24  24   0  24   1   0  11  59   0  24  94  13  24  24  24  24  24   1  96   0   5   0   0   0
T |  96   0  92  24   0   1  27  24  24  24  24  92  24   3   1   0   1   1  24   0   9  24  24  24  24  24   0   0  96  13   1   0   0

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updated Wed Jul 30 03:23:16 2025