4yhx_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LAGLIDADG MEGANUCLEASE I-GPEMI BOUND TO UNCLEAVED DNA (Ribosomal protein 3homing endonuclease-like fusion protein)
reference	Hallinan et al. Structure 24 862 2016
source	Grosmannia penicillata
experiment	X-ray (resolution=2.15, R-factor=0.181)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4yhx_A interface=18,22,24,26,28,29,34,36,40,42,66,70,72,74,172,174,176,178,180,182,187,189,195,215,217,219,221,224,226,228,232, nesinpwvltgfadaegSfilRiRnNnKSsagyStElgfQiTlhkkdksileniqstwkvgvianSgdnAvSlKvtrfedlrvvlnhfekyplitqklgdyllfkqafsvmenkehlkiegikrlvgikanlnwgltdelkeafvasggenifnknipnsgwlagftsgegCfFvSlIkSkSklgvQvQlvfsiTqhardrelmdnlvtylgcgYiKeKkKseFsWlEfvvTkfsdikdkiipvfqenniigvkledfedwckvaklieekkhltesgleeirniklnmnkgrv
interface signature	SRRNKSSEQTSASKCFSISSQQTYKKKFWET

Estimated binding specificities ?

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# IC=21.577 IC/col=0.981 n_of_columns=22

specificity:

A |   4   7  24   1   0   0   0   0   0   9  96  24   0   0  96  75   0   0   0   0   0   1
C |   7  21  24   3  96  96   0  96  78  12   0  24   0  96   0  21  96  96  96   0   0   5
G |   5  11  24   8   0   0  50   0   0  24   0  24   0   0   0   0   0   0   0   0   0   0
T |  80  57  24  84   0   0  46   0  18  51   0  24  96   0   0   0   0   0   0  96  96  90

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Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 19:03:00 2024