4yit_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LAGLIDADG MEGANUCLEASE I-AABMI BOUND TO UNCLEAVED DNA (Meganuclease I-AabMI)
reference	Hallinan et al. Structure 24 862 2016
source	Gremmeniella abietina
experiment	X-ray (resolution=3.24, R-factor=0.229)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4yit_A interface=15,17,19,21,22,24,26,28,30,32,54,56,60,62,64,66,158,160,164,166,168,174,176,180,182,202,206,207,209,211,213, inpwfltgfidgegCfRiSvTKwRvQlFfQiNlhekdrallesikdylkvgkiHiSgknLvQyRiQtfdeltilikhlkeyplvskkradfelfntahkliknnehlnkeginklvslkaslnlglsslklafpnviatrlnipdphwlsgfasaegCfMvgiAkSsAsstgyQvYltfIlTqhvrdenlmkclvdyfnwgRlarKRnVyEyQvkfsdvekllsffdkypilgekakdlqdfcsvsdlmkskthlteegvakirkikegmnr
interface signature	CRSTKRQFQNHSLQRQCMASAQYITRKRVEQ

Estimated binding specificities ?

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# IC=20.580 IC/col=1.029 n_of_columns=20

specificity:

A |   0   0   0  96   0   0   0  19  12  24  24  96  96   0   0   0  96  19   0  96
C |   0   0   0   0  96  96  96  12  21  24  24   0   0  96  96   0   0  51   0   0
G |  96  96   0   0   0   0   0  12  12  24  24   0   0   0   0   0   0  12   0   0
T |   0   0  96   0   0   0   0  53  51  24  24   0   0   0   0  96   0  14  96   0

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Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 19:03:37 2024