4zq9_ABC : 3D-footprint complex

structure name	X-RAY STRUCTURE OF AAV-2 OBD BOUND TO AAVS1 SITE 3:1
reference	Zarate-Perez et al. J.Biol.Chem. 290 27487 2015
source	Adeno-associated virus 2 (isolate Srivastava/1982) / Adeno-associated virus 2 (isolate Srivastava/1982) / Adeno-associated virus 2 (isolate Srivastava/1982) / Adeno-associated virus 2 (isolate Srivastava/1982) / Adeno-associated virus 2 (isolate Srivastava/1982) / Adeno-associated virus 2 (isolate Srivastava/1982)
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	5byg_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4zq9_A interface=95,99,130,133, pgfyeivikvpsdisdsfvnwvaekewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhl > 4zq9_B interface=98,102,133, pgfyeivikvpsdldgisdsfvnwvaekewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngagggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlt > 4zq9_C interface=94,98,129,132, pgfyeivikvpsdsdsfvnwvaekewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthv
interface signature	MRRA/MRR/MRRA

Estimated binding specificities ?

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# IC=13.705 IC/col=0.857 n_of_columns=16

specificity:

A |  10  91  10  24   6  90   0   0   5  85   0   0  24  24   0   0
C |  75   0  15  24   5   1   0  96   0   0   0  96  24  24   0  96
G |   6   5  61  24  75   5  96   0  86  10  96   0  24  24  96   0
T |   5   0  10  24  10   0   0   0   5   1   0   0  24  24   0   0

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updated Fri Dec 13 23:19:06 2024