5awh_B : 3D-footprint complex

structure name	RHODOBACTER SPHAEROIDES ARGONAUTE IN COMPLEX WITH GUIDE RNA/TARGET DNA HETERODUPLEX (Uncharacterized protein)
reference	Murakami et al. 'Nat 7 11846 2016
source	Rhodobacter sphaeroides
experiment	X-ray (resolution=2.00, R-factor=0.187)
structural superfamily	Ribonuclease H-like;
sequence family	Piwi domain 460;
reference complex	6d92_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5awh_B interface=25,43,188,272,284,434,437,438,441,484,549,583,608,625,627,628,630,665,672,673, qlvsngfevnlpdqvevivrdlpdPskvkeertrlmgywfvhWfdgklfhlrikaggpnvdgehrairtaehpwllrarlddaleealpkyaavkkrpftflaqkdelidaaataaglshrllnsfkviprfalspkiyepvdgttrvgvfvtigmrydieaslrgmyvvrrkrrgllgrvaklegsKenftrclsallghnykkllnalddqeagyrtgprfddavrrmgeflakkpirladninaqvgdrivfsnegqarnvrlapkveYvfdrtgaksaeYawrglsqfgpfdrpsfanrsprilvvypsstqgkvenflsafrdgmgsnysgfskgfvdlmgltkvefvmcpvevssadrngahtkynsaiedklagagevhagivvlfedharlpddrnpyihtksllltlgvptqqvrmptvllepkSlqYTlqNfsiatyaklngtpwtvnhdkaindelvvgmglaelsgsrtekRqrfvgittvfagdgsyllgnvskeceyegysdairesmtgilrelkkrnnwrpgdtvrvvfhahRplkrvdvasivfectreigsdqniqmafvtvshDhpfvlidrsergleaarkgvfappRgaisrvgrltrllavnSpQLiKrantplptpllvslhpdstfkdvdylaeqalkftSlswrstLPaatpvtifyseriaellgrlksipnwssanlniklkwsrwfl
interface signature	PWKYYSYTNRRDRSQLKSLP

Estimated binding specificities ?

contact

# IC=8.239 IC/col=0.485 n_of_columns=17

specificity:

A |   0  84  24  24  24  24  11   5  24  24   0  11  24   0  24  96  96
C |   0   5  24  24  24  24  11  11  24  24   0  12  24   7  24   0   0
G |  96   5  24  24  24  24  63  13  24  24  96  11  24  84  24   0   0
T |   0   2  24  24  24  24  11  67  24  24   0  62  24   5  24   0   0

scan!

home
updated Thu Sep 12 20:36:43 2024