5ay8_E : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y (H3.Y)
reference	Kurumizaka et al. 'Nucleic 44 6127 2016
source	HOMO SAPIENS
experiment	X-ray (resolution=2.80, R-factor=0.203)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5ay8_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5ay8_E interface=2,3,28,46, pHRykpgtlalreirkyqkstqlllrkLpfqrlvreiaqaispdlRfqsaaigalqeaseaylvqlfedtnlcaiharrvtimprdmqlarrlrre

  
  RG----------                                +8jh2_e    
                           +------------------1 
  RG------RT--          +--6                  +6px1_A    
                        !  ! 
  --------RA--          !  +------------------7e9c_F    
                     +--9 
  RGLC--------       !  !                    +8bvw_e    
                     !  ! +------------------4 
  --------RC--       !  +-7                  +7ux9_E    
                     !    ! 
  --------RC--     -10    +-------------------7yqk_C    
                     !  
  --------RT--       !                        +8u14_G    
                     !   +--------------------2 
  --------RG--       !   !                    +8upf_G    
                     +---8 
  --------RG--           !                   +8txv_G    
                         +-------------------5 
  --------RARA                               ! +6a5l_g    
                                             +-3 
  ----HGRTRG--                                 +8rbx_V

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updated Sat Jan 10 07:43:31 2026