interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y
(H3.Y)
referenceKurumizaka et al. 'Nucleic 44 6127 2016
sourceHOMO SAPIENS
experimentX-ray (resolution=2.80, R-factor=0.203)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes5ay8_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RG--------                             +8jh2_e    
                           +-------------4 
  RGLCRT----               !             +8hr1_E    
                      +----7 
  RGLC------          !    !              +8bvw_e    
                   +--9    +--------------1 
  RG--RT----       !  !                   +8grq_A    
                   !  ! 
  ----RG----       !  +-------------------5x0y_G    
                   !  
  ----RA----       !                         +1zla_C    
                 -11          +--------------3 
  ----RA--RA       !          !              +6a5l_g    
                   !        +-6 
  ----RG----       !        ! !              +8txv_G    
                   !  +-----8 +--------------2 
  ----RG----       !  !     !                +8ox0_C    
                   !  !     ! 
  ----RG----       +-10     +--------------8jla_C    
                      !  
  ----RT----          !          +---------8u14_G    
                      +----------5 
  ------RA--                     +---------6g0l_D    
                 

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updated Sun Aug 3 08:46:38 2025