5bmz_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR HCAR FROM ACINETOBACTER SP. ADP COMPLEXED WITH 24MER DNA.
reference	Midwest Center for Structural Genomics (MCSG)
experiment	X-ray (resolution=3.00, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5bmz_A interface=49,59,60,61,62,64,87, eeeprlsymiarvdriiskyltehlsaleislpqftalsvlaakpnlsNaklaersfiKPQSaNkilqdllangwiekapdpthgrRilvtvtpsgldklnqcnqvvqqleaqmlqgvdinlaflirnnlelmvknlst > 5bmz_B interface=49,59,60,61,62,64,65,87, eeeprlsymiarvdriiskyltehlsaleislpqftalsvlaakpnlsNaklaersfiKPQSaNKilqdllangwiekapdpthgrRilvtvtpsgldklnqcnqvvqqleaqmlqgvdinlaflirnnlelmvknlst
interface signature	NKPQSNR/NKPQSNKR

Estimated binding specificities ?

readout + contact

# IC=13.732 IC/col=0.723 n_of_columns=19

specificity:

A |  84   4  24   0   0  96  11   0  24  24  24  24   9   0   4  96  24  84   0
C |   4   4  24   0  96   0   9   0  24  24  24  24  72   0   0   0  24   4   0
G |   4   7  24   0   0   0  67   0  24  24  24  24   9   0  86   0  24   4   0
T |   4  81  24  96   0   0   9  96  24  24  24  24   6  96   6   0  24   4  96

scan!

home
updated Sat Dec 14 00:34:48 2024