5box_ABCD : 3D-footprint complex

structure name	STRUCTURE OF TRMBL2, AN ARCHAEAL CHROMATIN PROTEIN, SHOWS A NOVEL MODE OF DNA BINDING.
reference	Diederichs et al. J.Mol.Biol. 427 3216 2015
source	Pyrococcus furiosus
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;Phospholipase D/nuclease;
reference complex	5bpd_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5box_A interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5box_B interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5box_C interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5box_D interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv
interface signature	YPPRY/YPPRY/YPPRY/YPPRY

Estimated binding specificities ?

readout + contact

# IC=13.002 IC/col=0.722 n_of_columns=18

specificity:

A |   6  96   0   0  78   6  24  24  24  24  24  24   6   0  96   0  89   0
C |   6   0   0  96   6  75  24  24  24  24  24  24   6   0   0   0   7  96
G |   9   0   0   0   6   9  24  24  24  24  24  24   6  96   0   0   0   0
T |  75   0  96   0   6   6  24  24  24  24  24  24  78   0   0  96   0   0

scan!

home
updated Mon Jan 5 14:46:21 2026