5bpi_ABCD : 3D-footprint complex

structure name	STRUCTURE OF TRMBL2, AN ARCHAEAL CHROMATIN PROTEIN, SHOWS A NOVEL MODE OF DNA BINDING.
reference	Diederichs et al. J.Mol.Biol. 427 3216 2015
source	PYROCOCCUS FURIOSUS
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;Phospholipase D/nuclease;
reference complex	5bpd_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5bpi_A interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5bpi_B interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5bpi_C interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5bpi_D interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplieervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv
interface signature	YPPRY/YPPRY/YPPRY/YPPRY

Estimated binding specificities ?

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# IC=11.729 IC/col=0.617 n_of_columns=19

specificity:

A |  72   0  96   0   0  72  24  24  24  24  24  24  24  24   0  96   0  88   8
C |   8   0   0   0  96   8  24  24  24  24  24  24  24  24   0   0   0   0   8
G |   8   8   0   0   0   8  24  24  24  24  24  24  24  24  96   0   0   8   8
T |   8  88   0  96   0   8  24  24  24  24  24  24  24  24   0   0  96   0  72

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updated Thu Jun 25 02:17:59 2026