5byg_AB : 3D-footprint complex

structure name	X-RAY STRUCTURE OF AAV2 OBD-AAVS1 COMPLEX 2:1
reference	Escalante et al. J.Biol.Chem. 290 27487 2015
source	Adeno-associated virus 2
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	5byg_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5byg_A interface=83,87,118,121, mpgfyeivikvpsewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtqe > 5byg_B interface=97,101,132,135, mpgfyeivikvpsdgisdsfvnwvaekewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtqeqnkenq
interface signature	MRRA/MRRA

Estimated binding specificities ?

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# IC=9.209 IC/col=0.767 n_of_columns=12

specificity:

A |   0   0  24  13   0   0   0   1   7  24   7   5
C |   0  94  24  65   0  96   2  71  11  24  17  89
G |  96   1  24   7  96   0   0   3  65  24  19   1
T |   0   1  24  11   0   0  94  21  13  24  53   1

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updated Tue Sep 10 02:47:19 2024