5byg_AB : 3D-footprint complex

structure name	X-RAY STRUCTURE OF AAV2 OBD-AAVS1 COMPLEX 2:1
reference	Escalante et al. J.Biol.Chem. 290 27487 2015
source	Adeno-associated virus 2
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	5byg_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5byg_A interface=83,87,118,121, mpgfyeivikvpsewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtqe > 5byg_B interface=97,101,132,135, mpgfyeivikvpsdgisdsfvnwvaekewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtqeqnkenq
interface signature	MRRA/MRRA

Estimated binding specificities ?

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# IC=8.878 IC/col=0.740 n_of_columns=12

specificity:

A |   1  49  24  13   7  92   0   0  11  24   7   0
C |   3  19  24  53   1   1   0  96   9  24   5  96
G |  88  19  24  11  85   3  96   0  73  24  83   0
T |   4   9  24  19   3   0   0   0   3  24   1   0

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updated Sat Dec 14 00:48:16 2024