5byg_CD : 3D-footprint complex

structure name	X-RAY STRUCTURE OF AAV2 OBD-AAVS1 COMPLEX 2:1
reference	Escalante et al. J.Biol.Chem. 290 27487 2015
source	Adeno-associated virus 2
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	5byg_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5byg_C interface=96,100,131,134, mpgfyeivikvpsgisdsfvnwvaekewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtq > 5byg_D interface=76,80,111, mpgfyeivikppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngagggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtqeqnkenq
interface signature	MRRA/MRR

Estimated binding specificities ?

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# IC=9.809 IC/col=0.755 n_of_columns=13

specificity:

A |   4   0   0  24  12   0   0   0   4  24  24   4   0
C |  84   0  88  24  60   0  88   4  84  24  24  72  96
G |   4  96   4  24   8  96   4   0   4  24  24   4   0
T |   4   0   4  24  16   0   4  92   4  24  24  16   0

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updated Tue Sep 10 02:47:32 2024