5byg_CD : 3D-footprint complex

structure name	X-RAY STRUCTURE OF AAV2 OBD-AAVS1 COMPLEX 2:1
reference	Escalante et al. J.Biol.Chem. 290 27487 2015
source	Adeno-associated virus 2
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	5byg_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5byg_C interface=96,100,131,134, mpgfyeivikvpsgisdsfvnwvaekewelppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngAgggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtq > 5byg_D interface=76,80,111, mpgfyeivikppdsdmdlnlieqapltvaeklqrdfltewrrvskapealffvqfekgesyfhmhvlvettgvksMvlgRflsqirekliqriyrgieptlpnwfavtktRngagggnkvvdesyipnfllpktqpelqwawtnmeqylsaclnlterkrlvaqhlthvsqtqeqnkenq
interface signature	MRRA/MRR

Estimated binding specificities ?

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# IC=9.370 IC/col=0.721 n_of_columns=13

specificity:

A |   0  13  24  24   4  78   4   0  13  24   8   0   6
C |   0   0  24  24   1   6   4  96  14  24   6  96   4
G |  96  79  24  24  87   8  88   0  65  24  78   0  82
T |   0   4  24  24   4   4   0   0   4  24   4   0   4

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updated Sat Dec 14 00:48:30 2024