5crx_AB : 3D-footprint complex

structure name	ASYMMETRIC DNA-BENDING IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION SYNAPSE
reference	Van Duyne et al.
source	Enterobacteria phage P1
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5crx_A interface=22,23,26,29,68,69,72,76,114,207,209,210,223,225,228,248, tsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdageraKqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtrnldsetgamvrlle > 5crx_B interface=22,23,26,29,68,69,72,183,223,225,226,239,241,244,264, tsdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgqlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqagg
interface signature	HTMSKTQQKRRKSRER/HTMSKTQKRRKSRER

Estimated binding specificities ?

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# IC=22.896 IC/col=0.716 n_of_columns=32

specificity:

A |   0  88  24  24  24   4   0   5   0  87   0  96   0  24  24  24  24  24  24   0   0  96   4  83   0   0  83  24  24  24   4  91
C |   0   4  24  24  24   4  96   4   0   0   0   0   0  24  24  24  24  24  24  96   0   0   4   4  96   0   4  24  24  24   4   0
G |   0   4  24  24  24   5   0  83   0   4   0   0  96  24  24  24  24  24  24   0   0   0   0   5   0  96   4  24  24  24   5   4
T |  96   0  24  24  24  83   0   4  96   5  96   0   0  24  24  24  24  24  24   0  96   0  88   4   0   0   5  24  24  24  83   1

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updated Mon Jan 5 15:28:16 2026