interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM SKN7 WITH SSRE DNA
(Putative transcription factor)
referenceHayer-Hartl et al. Nat.Struct.Mol.Biol. 23 140 2016
sourceChaetomium thermophilum
experimentX-ray (resolution=2.40, R-factor=0.231)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyHSFtype DNAbinding;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRNKR

Estimated binding specificities ?

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# IC=5.339 IC/col=0.890 n_of_columns=6 specificity:   
A |   9   9   0   0   0  11
C |   9   9   0  96   0   9
G |  11  69  96   0   0  67
T |  67   9   0   0  96   9
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updated Tue Dec 17 01:26:42 2024