5d8l_DF : 3D-footprint complex

structure name	HUMAN HSF2 DNA BINDING DOMAIN IN COMPLEX WITH 3-SITE HSE DNA AT 2.1 ANGSTROMS RESOLUTION
reference	Jaeger et al. Nat.Struct.Mol.Biol. 23 147 2016
source	Homo sapiens
experiment	X-ray (resolution=2.07, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7dci_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d8l_D interface=55,57,58,59,61,62,95, hmpaflsklwtlveethtnefitwsqngqsflvldeqrfakeilpkyfkhnnmaSfVRQlNMygfrkvvhidgpvefqhpyfkqgqddllenikRkv > 5d8l_F interface=49,55,57,58,59,61,62,96, hmpaflsklwtlveethtnefitwsqngqsflvldeqrfakeilpkyfKhnnmaSfVRQlNMygfrkvvhiddgpvefqhpyfkqgqddllenikRkv
interface signature	SVRQNMR/KSVRQNMR

Estimated binding specificities ?

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# IC=9.278 IC/col=0.773 n_of_columns=12

specificity:

A |  92   0  90  55  24  24   3  13  13   3   0   0
C |   0   0   1  11  24  24   5   1  15   1  96   0
G |   0  96   1  15  24  24  87  19  13   0   0   0
T |   4   0   4  15  24  24   1  63  55  92   0  96

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updated Sat Dec 14 01:27:04 2024