5dny_BD : 3D-footprint complex

structure name	STRUCTURE OF THE ATPRS-MRE11/RAD50-DNA COMPLEX
reference	'Embo 35 743 2016 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
experiment	X-ray (resolution=3.11, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dny_B interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegekemsnlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking > 5dny_D interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegelnynlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking
interface signature	SR/SR

Estimated binding specificities ?

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# IC=4.347 IC/col=0.241 n_of_columns=18

specificity:

A |   9   0  24  24  24  24  24  24  24  24  24   0  16  24  24  24  81   0
C |  25   4  24  24  24  24  24  24  24  24  24   4  57  24  24  24   4  86
G |  48   6  24  24  24  24  24  24  24  24  24   0   4  24  24  24   7   6
T |  14  86  24  24  24  24  24  24  24  24  24  92  19  24  24  24   4   4

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updated Sat Dec 14 01:32:10 2024