5dny_BD : 3D-footprint complex

structure name	STRUCTURE OF THE ATPRS-MRE11/RAD50-DNA COMPLEX
reference	'Embo 35 743 2016 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	5dny_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dny_B interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegekemsnlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking > 5dny_D interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegelnynlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking
interface signature	SR/SR

Estimated binding specificities ?

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# IC=4.776 IC/col=0.265 n_of_columns=18

specificity:

A |   9   4  24  24  24  24  24  24  24  24  24   0  18  24  24  24  96   4
C |  22   2  24  24  24  24  24  24  24  24  24   0  41  24  24  24   0  91
G |  45   4  24  24  24  24  24  24  24  24  24   4  13  24  24  24   0   0
T |  20  86  24  24  24  24  24  24  24  24  24  92  24  24  24  24   0   1

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updated Mon Jan 5 15:49:52 2026