5dny_BD : 3D-footprint complex

structure name	STRUCTURE OF THE ATPRS-MRE11/RAD50-DNA COMPLEX
reference	'Embo 35 743 2016 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	5dny_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dny_B interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegekemsnlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking > 5dny_D interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegelnynlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking
interface signature	SR/SR

Estimated binding specificities ?

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# IC=4.904 IC/col=0.272 n_of_columns=18

specificity:

A |   0   0  24  24  24  25  90  24  24  24  24  24  24  24  24  24  50   0
C |   5   5  24  24  24  16   6  24  24  24  24  24  24  24  24  24  25  96
G |  90   1  24  24  24  35   0  24  24  24  24  24  24  24  24  24  16   0
T |   1  90  24  24  24  20   0  24  24  24  24  24  24  24  24  24   5   0

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updated Thu Jun 25 03:16:49 2026