5eax_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DNA2 IN COMPLEX WITH AN SSDNA (DNA replication ATP-dependent helicasenuclease DNA2)
reference	Pavletich et al. Elife 4 ? 2015
source	Mus musculus
experiment	X-ray (resolution=3.05, R-factor=0.223)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	DNA replication factor Dna2;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5eax_A interface=123,142,151,155,388,447,484,486,508,523,539,556,557,558,561,563,668,735,785,787,985,991, mepldeldlllleavprvellrkkadalfpetvlsrgvdnrylvlavetsqnergaeekrlhvtasqdrehevlcilrngwssvpvepgdivhlegdctsepwiidddfgyfilypdmmisgTsvassirclrravlsetfRgsdpatrqMligTilhevfqkaisesfaperlqelalqtlrevrhlkemyrlnlsqdeilceveeylpsfskwaedfmrkgpssefpqmqlslpsdgrsspcnievvksldieesiwsprfglkgkiavtvgvkihrdckmkykvmplelktgkesnsiehrsqvvlytllsqerredpeagwllylktgqmypvpanhldkrellklrnwlaasllhrvsraapgeearlsalpqiieeektckYcsqigncalysraveeddasipeamlskiqeetrhlqlahlkyfslwclmltlesqskDnrkthqsiwltpaseleesgncvgnlvrtepvsrvcDgQylhnfqrkngpmpatnlmagdRiilsgeerklfalsKgyvkkmnkaavtcllDrnlstlpattvfrldrEERhgDiStplgnlsklmestdpskrlreliidfrepqfiaylssvlphdakdtvanilkglnkpqrqamkrvllskdytlivgmpgtgkttticalvrilsacgfsvlltsYthsavdnillklakfkvgflrlgqshkvhpdiqkfteeeicrsrsiaslahleelynshpivattcMginhpifsrktfdfcivdeasqisqpvclgplffsrrfvlvgdhqqlppLvVnrearalgmseslfkrlernesavvqltvqyrmnrkimslsnkltyagklecgsdrvanavlalpnlkdarlslqlyadysdspwlagvlepdnpvcflntdkvpapeqvenggvsnvtearlivfltstfikagcspsdigviapyrqqlriisdllarssvgmvevntvdkyqgrdkslilvsfvrsnedgtlgeLlkdwrRlnvaltrakhklillgsvsslkrfpplgtlfdhlnaeqlildlpsreheslshil
interface signature	TRMTYDDQRKDEERDSYMLVLR

Estimated binding specificities ?

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# IC=12.939 IC/col=1.078 n_of_columns=12

specificity:

A |   0   0   0   0  16   0   0   0  14  14   0   0
C |   0   0   0   0   7   0   0   0  14   7   0   0
G |   0   0   0   0  14   0   0   0   9  14   0   0
T |  96  96  96  96  59  96  96  96  59  61  96  96

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updated Tue Dec 17 01:35:25 2024