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structure nameHUMAN PRDM9 ALLELE-A ZNF DOMAIN WITH ASSOCIATED RECOMBINATION HOTSPOT DNA SEQUENCE III
(Histone-lysine N-methyltransferase PRDM9)
referenceHorton et al. 'Genes 30 257 2016
sourceHomo sapiens
experimentX-ray (resolution=2.05, R-factor=0.202)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex5ei9_F
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNSHRDSHRRDSNNKSHRR

Estimated binding specificities ?

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# IC=15.769 IC/col=1.126 n_of_columns=14 specificity:   
A |   8   0   0   0  10   0   0   0   0  87   9   0   0  69
C |   8   0  96  96   0  96  96  96   0   0   0  96  96   8
G |  11  96   0   0   8   0   0   0   0   9  87   0   0  11
T |  69   0   0   0  78   0   0   0  96   0   0   0   0   8
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updated Thu Sep 12 21:13:00 2024