5esp_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LAGLIDADG MEGANUCLEASE I-PANMI WITH COORDINATED CALCIUM IONS (I-PANMI)
reference	Hallinan et al. Structure 24 862 2016
source	PODOSPORA ANSERINA
experiment	X-ray (resolution=3.00, R-factor=0.230)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5esp_A interface=16,18,26,27,32,36,38,40,62,64,68,70,72,74,173,175,177,179,181,183,184,189,191,195,197,219,221,223,225,229,231, klnpsyisgfvdgegSfMltiikdnKYklgwRvvcRfViSlhkkdlsllnkikeffdvgnvFlMtkdSaQyRvEslkgldliinhfdkyplitkkqadyklfkmahnliknkshltkegllelvaikavinnglnndlsiafpgintilrpdtslpqilnpfwlsgfvdaegCfSvVvFkSkTSklgeAvKlsfIlTqsnrdeylikslieylgcgntSlDpRgTidfKvTnfssikdiivpffikyplkgnknldftdfcevvrlmenkshltkegldqikkirnrmntnr
interface signature	SMKYRRVSFMSQRECSVFSTSAKITSDRTKT

Estimated binding specificities ?

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# IC=21.356 IC/col=1.017 n_of_columns=21

specificity:

A |   8   0   4   0   0   0  96   0  84  24  24   0   0   0   8  96   4   0  96  68   4
C |  76   0  84  96   0  96   0   0   4  24  24  96  96   0   8   0   0  96   0   8   4
G |   8   0   4   0   0   0   0   0   4  24  24   0   0   0   8   0   0   0   0   8  84
T |   4  96   4   0  96   0   0  96   4  24  24   0   0  96  72   0  92   0   0  12   4

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Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 19:31:31 2024