5f3w_BD : 3D-footprint complex

structure name	STRUCTURE OF THE ATPRS-MRE11/RAD50-DNA COMPLEX
reference	'Embo 35 743 2016 C10 H16 N5 O12 P3 S
source	METHANOCALDOCOCCUS JANNASCHII DSM 2661
experiment	X-ray (resolution=3.11, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	5f3w_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5f3w_B interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegekemsnlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking > 5f3w_D interface=54,92, msmilkeirmnnfkshvnsrikfekgivaiigengsgkssifeavffalfgagSnfnydtiitkgkksvyveldfevngnnykiireydsgRggaklykngkpyattisavnkavneilgvdrnmflnsiyikqgeiakflslkpsekletvakllgidefekcyqkmgeivkeyekrleriegelnynlekekekltkfveyldkvrrifgrngfqaylrekyvpliqkylneafsefdlpysfveltkdfevrvhapngvltidnlsggeqiavalslrlaianalignrveciildeptvyldenrraklaeifrkvksipqmiiithhreledvadviinvkkdgnvskvking
interface signature	SR/SR

Estimated binding specificities ?

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# IC=5.028 IC/col=0.279 n_of_columns=18

specificity:

A |  19  19  24  24  24  24  24  24  24  24  24   4   0  24  24  24  92   0
C |  24  24  24  24  24  24  24  24  24  24  24   0  96  24  24  24   0  91
G |  48  14  24  24  24  24  24  24  24  24  24   1   0  24  24  24   4   4
T |   5  39  24  24  24  24  24  24  24  24  24  91   0  24  24  24   0   1

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updated Sat Dec 16 00:59:08 2023